Projects

A selection of projects I’ve worked on.

Featured projects

Python package

streamlit-cytoscape

A flexible, customizable Streamlit component for interactive graph visualization using Cytoscape.js.

Python Streamlit View on GitHub → (opens in a new tab)

R package · ISMB/ECCB 2025

clustOpt

R package for optimizing Seurat clustering resolution via cross-validation and random forests.

R Seurat View on GitHub → (opens in a new tab)

Python package

supremo_lite

Lightweight, model-agnostic Python tool for analyzing genetic variant effects on DNA sequences.

Python Variants View on GitHub → (opens in a new tab)

Web app

GeneSet_Translator

Interactive knowledge graph explorer for discovering DE gene and disease relationships via NCATS Translator APIs, with network visualization and AI-assisted interpretation.

Knowledge graph Translator View on GitHub → (opens in a new tab)